PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483933
Common NameARALYDRAFT_483933
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 173aa    MW: 19288.5 Da    PI: 8.672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483933genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-1953101355
     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             y+G+r+++ +g+W+AeIrdp++     r++lg+f ta+eAa+a++ a+ +++g
  483933  53 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTADEAARAYDVAAIRIRG 101
             9*******.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2352110IPR016177DNA-binding domain
SMARTSM003802.3E-4152115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3352110IPR001471AP2/ERF domain
PROSITE profilePS5103225.00152109IPR001471AP2/ERF domain
PRINTSPR003671.1E-115364IPR001471AP2/ERF domain
CDDcd000184.60E-3453111No hitNo description
PfamPF008475.8E-1353101IPR001471AP2/ERF domain
PRINTSPR003671.1E-117591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MCGGAIISDF IWANSSLAES EPSQVGSVSS SKKRKPVSVD GQRDGKRERK NLYRGIRQRP  60
WGKWAAEIRD PRKGVRVWLG TFKTADEAAR AYDVAAIRIR GRKAKLNFPN TQVEEADTKP  120
GNQNELVSGN QVESLSEDLM ALEDYMRCYQ IPFADDQSAT DLGNLWSYQD SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2353109663ATERF1
3gcc_A3e-2353109663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746450.0AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882121.11e-125hypothetical protein ARALYDRAFT_483933
SwissprotO222591e-109ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLD7LGN91e-125D7LGN9_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.4__2993__AT2G47520.11e-125(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-80ERF family protein